Atefeh Taherian Fard
Research Fellow
Australian Institute for Bioengineering and Nanotechnology
| Featured projects | Duration |
|---|---|
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Expanding the scope of multimodal single cell sequencing Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Publications
Book Chapter
Taherian Fard, Atefeh and Ragan, Mark A. (2019). Quantitative modelling of the Waddington epigenetic landscape. Computational stem cell biology: methods and protocols. (pp. 157-171) edited by Patrick Cahan. New York, United States: Humana Press. doi: 10.1007/978-1-4939-9224-9_7
Journal Articles
Leeson, Hannah C., Aguado, Julio, Gómez-Inclán, Cecilia, Chaggar, Harman Kaur, Fard, Atefah Taherian, Hunter, Zoe, Lavin, Martin F., Mackay-Sim, Alan and Wolvetang, Ernst J. (2024). Ataxia Telangiectasia patient-derived neuronal and brain organoid models reveal mitochondrial dysfunction and oxidative stress. Neurobiology of Disease, 199 106562, 106562. doi: 10.1016/j.nbd.2024.106562
Ren, Zuen, Dharmaratne, Malindrie, Liang, Huizhi, Benard, Outhiriaradjou, Morales-Gallego, Miriam, Suyama, Kimita, Kumar, Viney, Fard, Atefeh Taherian, Kulkarni, Ameya S., Prystowsky, Michael, Mar, Jessica C., Norton, Larry and Hazan, Rachel B. (2024). Redox signalling regulates breast cancer metastasis via phenotypic and metabolic reprogramming due to p63 activation by HIF1α. British Journal of Cancer, 130 (6), 908-924. doi: 10.1038/s41416-023-02522-5
Aguado, Julio, Amarilla, Alberto A., Taherian Fard, Atefeh, Albornoz, Eduardo A., Tyshkovskiy, Alexander, Schwabenland, Marius, Chaggar, Harman K., Modhiran, Naphak, Gómez-Inclán, Cecilia, Javed, Ibrahim, Baradar, Alireza A., Liang, Benjamin, Peng, Lianli, Dharmaratne, Malindrie, Pietrogrande, Giovanni, Padmanabhan, Pranesh, Freney, Morgan E., Parry, Rhys, Sng, Julian D. J., Isaacs, Ariel, Khromykh, Alexander A., Valenzuela Nieto, Guillermo, Rojas-Fernandez, Alejandro, Davis, Thomas P., Prinz, Marco, Bengsch, Bertram, Gladyshev, Vadim N., Woodruff, Trent M., Mar, Jessica C. ... Wolvetang, Ernst J. (2023). Senolytic therapy alleviates physiological human brain aging and COVID-19 neuropathology. Nature Aging, 3 (12), 1561-1575. doi: 10.1038/s43587-023-00519-6
Zheng, Huiwen, Vijg, Jan, Fard, Atefeh Taherian and Mar, Jessica Cara (2023). Measuring cell-to-cell expression variability in single-cell RNA-sequencing data: a comparative analysis and applications to B cell aging. Genome Biology, 24 (1) 238, 1-26. doi: 10.1186/s13059-023-03036-2
Taherian Fard, Atefeh, Leeson, Hannah C., Aguado, Julio, Pietrogrande, Giovanni, Power, Dominique, Gómez-Inclán, Cecilia, Zheng, Huiwen, Nelson, Christopher B., Soheilmoghaddam, Farhad, Glass, Nick, Dharmaratne, Malindrie, Watson, Ebony R., Lu, Jennifer, Martin, Sally, Pickett, Hilda A., Cooper-White, Justin, Wolvetang, Ernst J. and Mar, Jessica C. (2023). Deconstructing heterogeneity of replicative senescence in human mesenchymal stem cells at single cell resolution. GeroScience, 46 (1), 1-17. doi: 10.1007/s11357-023-00829-y
Dharmaratne, Malindrie, Kulkarni, Ameya S., Taherian Fard, Atefeh and Mar, Jessica C. (2023). scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data. GigaScience, 12 giac126, 1-18. doi: 10.1093/gigascience/giac126
Watson, Ebony Rose, Mora, Ariane, Taherian Fard, Atefeh and Mar, Jessica Cara (2022). How does the structure of data impact cell–cell similarity? Evaluating how structural properties influence the performance of proximity metrics in single cell RNA-seq data. Briefings in Bioinformatics, 23 (6), 1-14. doi: 10.1093/bib/bbac387
Ding, Qiao, Kesavan, Kaamini, Lee, Kah Meng, Wimberger, Elyse, Robertson, Thomas, Gill, Melinder, Power, Dominique, Chang, Jeryn, Fard, Atefeh T., Mar, Jessica C., Henderson, Robert D., Heggie, Susan, McCombe, Pamela A., Jeffree, Rosalind L., Colditz, Michael J., Hilliard, Massimo A., Ng, Dominic C. H., Steyn, Frederik J., Phillips, William D., Wolvetang, Ernst J., Ngo, Shyuan T. and Noakes, Peter G. (2022). Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease. Acta Neuropathologica Communications, 10 (1) 61, 61. doi: 10.1186/s40478-022-01360-5
Ren, Zuen, Liang, Huizhi, Galbo, Phillip M., Dharmaratne, Malindrie, Kulkarni, Ameya S., Fard, Atefeh Taherian, Aoun, Marie Louise, Martinez-Lopez, Nuria, Suyama, Kimita, Benard, Outhiriaradjou, Zheng, Wei, Liu, Yang, Albanese, Joseph, Zheng, Deyou, Mar, Jessica C., Singh, Rajat, Prystowsky, Michael B., Norton, Larry and Hazan, Rachel B. (2022). Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer. Proceedings of the National Academy of Sciences, 119 (8) e2107266119. doi: 10.1073/pnas.2107266119
Watson, Ebony Rose, Taherian Fard, Atefeh and Mar, Jessica Cara (2022). Computational methods for single-cell imaging and omics data integration. Frontiers in Molecular Biosciences, 8 768106, 768106. doi: 10.3389/fmolb.2021.768106
Philp, Lisa K., Rockstroh, Anja, Sadowski, Martin C., Taherian Fard, Atefeh, Lehman, Melanie, Tevz, Gregor, Libério, Michelle S., Bidgood, Charles L., Gunter, Jennifer H., McPherson, Stephen, Bartonicek, Nenad, Wade, John D., Otvos, Laszlo and Nelson, Colleen C. (2021). Leptin antagonism inhibits prostate cancer xenograft growth and progression. Endocrine-Related Cancer, 28 (5), 353-375. doi: 10.1530/erc-20-0405
Adolphe, Christelle, Xue, Angli, Fard, Atefeh Taherian, Genovesi, Laura A., Yang, Jian and Wainwright, Brandon J. (2021). Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility. Genome Medicine, 13 (1) 19, 19. doi: 10.1186/s13073-021-00827-9
Tousignant, Kaylyn D., Rockstroh, Anja, Poad, Berwyck L. J., Talebi, Ali, Young, Reuben S. E., Fard, Atefeh Taherian, Gupta, Rajesh, Zang, Tuo, Wang, Chenwei, Lehman, Melanie L., Swinnen, Johan, Blanksby, Stephen J., Nelson, Colleen C. and Sadowski, Martin C. (2020). Therapy-induced lipid uptake and remodeling underpin ferroptosis hypersensitivity in prostate cancer. Cancer & Metabolism, 8 (1) 11. doi: 10.1186/s40170-020-00217-6
Tousignant, Kaylyn D., Rockstroh, Anja, Fard, Atefeh Taherian, Lehman, Melanie L., Wang, Chenwei, McPherson, Stephen J., Philp, Lisa K., Bartonicek, Nenad, Dinger, Marcel E., Nelson, Colleen C. and Sadowski, Martin C. (2019). Lipid uptake is an androgen-enhanced lipid supply pathway associated with prostate cancer disease progression and bone metastasis. Molecular Cancer Research, 17 (5), 1166-1179. doi: 10.1158/1541-7786.MCR-18-1147
Stylianou, Nataly, Lehman, Melanie L., Wang, Chenwei, Fard, Atefeh Taherian, Rockstroh, Anja, Fazli, Ladan, Jovanovic, Lidija, Ward, Micheal, Sadowski, Martin C., Kashyap, Abhishek S., Buttyan, Ralph, Gleave, Martin E., Westbrook, Thomas F., Williams, Elizabeth D., Gunter, Jennifer H., Nelson, Colleen C. and Hollier, Brett G. (2019). A molecular portrait of epithelial-mesenchymal plasticity in prostate cancer associated with clinical outcome (vol 38, pg 913, 2019). Oncogene, 38 (13), 2436-2436. doi: 10.1038/s41388-018-0587-3
Stylianou, Nataly, Lehman, Melanie L., Wang, Chenwei, Fard, Atefeh Taherian, Rockstroh, Anja, Fazli, Ladan, Jovanovic, Lidija, Ward, Micheal, Sadowski, Martin C., Kashyap, Abhishek S., Buttyan, Ralph, Gleave, Martin E., Westbrook, Thomas F., Williams, Elizabeth D., Gunter, Jennifer H., Nelson, Colleen C. and Hollier, Brett G. (2018). A molecular portrait of epithelial–mesenchymal plasticity in prostate cancer associated with clinical outcome. Oncogene, 38 (7), 913-934. doi: 10.1038/s41388-018-0488-5
Taherian Fard, Atefeh and Ragan, Mark A. (2017). Modeling the attractor landscape of disease progression: a network-based approach. Frontiers in Genetics, 8 (APR) 48, 48. doi: 10.3389/fgene.2017.00048
Taherian Fard, Atefeh, Srihari, Sriganesh, Mar, Jessica C. and Ragan, Mark A. (2016). Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks. NPJ Systems Biology and Applications, 2 (1) 16001, 16001. doi: 10.1038/npjsba.2016.1
Taherian-Fard, Atefeh, Srihari, Sriganesh and Ragan, Mark A. (2014). Breast cancer classification: linking molecular mechanisms to disease prognosis. Briefings in Bioinformatics, 16 (3) bbu020, 461-474. doi: 10.1093/bib/bbu020
Hoque, Md. Aminul, Fard, Atefeh Taherian, Rahman, Mosfequr, Alattas, Omar, Akazawa, Kohei and Merican, Amir Feisal (2011). Comparison of dynamic responses of cellular metabolites in Escherichia coli to pulse addition of substrates. Biologia, 66 (6) 954, 954-966. doi: 10.2478/s11756-011-0136-9
Salman, Amna, Taherian Fard, Atefeh, Nasir, Arshan and Bokhari, Habib (2010). Comparative analysis of organophosphate degrading enzymes from diverse species. Bioinformation, 5 (2), 67-72.
Salman, Amna, Fard, Atefeh Taherian, Nasir, Arshan and Bokhari, Habib (2010). Comparative analysis of organophosphate degrading enzymes from diverse species. Bioinformation, 5 (2), 67-72. doi: 10.6026/97320630005067
Fard, Atefeh Taherian, Salman, Amna, Kazemi, Bahram and Bokhari, Habib (2009). In silico comparative genome analysis of malaria parasite Plasmodium falciparum and Plasmodium vivax chromosome 4. Parasitology Research, 104 (6), 1361-1364. doi: 10.1007/s00436-009-1338-8
Conference Paper
Ren, Zuen, Dharmaratne, Malindrie, Kulkarni, Ameya, Fard, Atefeh Taherian, Mar, Jessica, Galbo, Phillip M., Liu, Yang, Zheng, Deyou, Liang, Huizhi, Benard, Outhiriaradjou, Suyama, Kimita, Prystowsky, Michael B., Norton, Larry and Hazan, Rachel B. (2020). Redox regulation of tumor cell heterogeneity in the PyMT mammary tumor model revealed by single cell RNA sequencing. AACR Annual Meeting, Online, 22-24 June, 2020. Philadelphia, PA, United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2020-4426
Data Collection
Ngo, Shyuan, Power, Dominique, Andersen, Stacey, Taherian Fard, Atefeh, Chang, Jeryn and Steyn, Frederik (2022). snrRNA-seq_muscle_dataset. The University of Queensland. (Dataset) doi: 10.48610/0106c8e
Thesis
Taherian Fard, Atefeh (2016). Modelling the landscape of cellular development and disease. PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. doi: 10.14264/uql.2016.1009