The Genome Innovation Hub continually develops a number of protocols and procedures while undertaking our collaborative projects. Below are a selection of detailed developments useful to researchers undertaking Single-cell and Short read sequencing procedures in the laboratory.

Developments

Featured projects Duration
Optimised bioinformatics and validation pipeline for genome-wide CRISPR screening data
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2021
RNA velocity quantification of single-cell transcriptomics
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2021
Expanding the scope of multimodal single cell sequencing
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2021
HTS single cell CRISPR technology for experimental validation of population genetics and functional genomics discovery
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2021
Understanding host-pathogen interactions through development of new co-transcriptomic single cell RNA sequencing technologies
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2020
Single-cell transcriptome and chromatin profiling in plant cells
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2020
Combining novel scSLAM-seq technology with 10x Genomics Chromium to track microchanges in newly synthesised RNA
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2020
Simultaneous identification of RNA-chromatin interactions and transcriptomes in single cells
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2020
Genome-wide CRISPR screening for modifiers of diverse cellular phenotypes
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2019
Quantitative transcriptome analysis (CAGE)
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2019

 

Publication

Genotype-free demultiplexing of pooled single-cell RNA-seq

Jun Xu, Caitlin Falconer, Quan Nguyen, Joanna Crawford, Brett D. McKinnon, Sally Mortlock, Anne Senabouth, Stacey Andersen, Han Sheng Chiu, Longda Jiang, Nathan J. Palpant, Jian Yang, Michael D. Mueller, Alex W. Hewitt, Alice Pébay, Grant W. Montgomery, Joseph E. Powell & Lachlan J.M Coin

Genome Biology volume 20, Article number: 290 (2019)

  • Stacey Andersen

    Stacey Andersen

    Senior Research Assistant
    Genome Innovation Hub
    Senior Research Assistant
    IMB Sequencing Facility
  • Dr Tim Bruxner

    Dr Tim Bruxner

    Sequencing Specialist
    Institute for Molecular Bioscience
  • Joanna Crawford

    Joanna Crawford

    Senior Research Assistant
    Institute for Molecular Bioscience
  • Dr Elizabeth Dun

    Dr Elizabeth Dun

    UQ Amplify Associate Lecturer
    School of Biological Sciences, Faculty of Science
  • Dr Emily Goodall

    Dr Emily Goodall

    Research Officer
    Institute for Molecular Bioscience
  • Professor Ian Henderson

    Professor Ian Henderson

    Director
    Institute for Molecular Bioscience
    Affiliate Professor
    UQ Centre for Clinical Research, Faculty of Medicine
    Affiliate Professor
    School of Chemistry and Molecular Biosciences, Faculty of Science
  • Jazmine Lee Humphreys

    PhD candidate
    School of Biological Sciences, Faculty of Science
  • Dr Ronan Kapetanovic

    Dr Ronan Kapetanovic

    Senior Research Officer
    Institute for Molecular Bioscience
  • Dr Denuja Karunakaran

    Dr Denuja Karunakaran

    IMB Fellow
    Institute for Molecular Bioscience
  • Professor Grant Montgomery

    Professor Grant Montgomery

    Director
    Genome Innovation Hub (GIH)
    Professorial Research Fellow - GL
    Institute for Molecular Biosciences (IMB)
    Affiliate Professorial Research Fellow
    Queensland Brain Institute (QBI)
    Affiliate Professorial Research Fellow
    Office of the Pro-Vice-Chancellor (Research Infrastructure)
  • Valentine Murigneux

    Valentine Murigneux

    Senior research assistant
    Genome Innovation Hub
    Bioinformatician
    QCIF Facility for Advanced Bioinformatics
  • Dr Minh-Duy Phan

    Postdoctoral Research Fellow
    School of Chemistry and Molecular Biosciences, Faculty of Science
  • Dr Divya Ramnath

    Dr Divya Ramnath

    Research Officer
    Institute for Molecular Bioscience
  • Dr Elizabeth Ross

    Dr Elizabeth Ross

    Research Fellow
    Centre for Animal Science, Queensland Alliance for Agriculture and Food Innovation
  • Dr Rebecca San Gil

    Dr Rebecca San Gil

    Postdoctoral Research Fellow
    Queensland Brain Institute
  • Professor Matt Sweet

    Professor Matt Sweet

    Professorial Research Fellow - GL
    Institute for Molecular Bioscience
    Affiliated Professor
    School of Chemistry and Molecular Biosciences
  • Dr Milos Tanurdzic

    Dr Milos Tanurdzic

    Senior Lecturer
    School of Biological Sciences, Faculty of Science
  • Jessica von Pein

    Jessica von Pein

    PhD candidate
    Institute for Molecular Bioscience
  • Dr Adam Walker

    Dr Adam Walker

    Ross Maclean Fellow
    Queensland Brain Institute
  • Isabel Warner

    Isabel Warner

    PhD candidate
    Institute for Molecular Bioscience
  • Dr Sohye Yoon

    Dr Sohye Yoon

    Research Assistant
    Genome innovation Hub
  • Dr Qiongyi Zhao

    Dr Qiongyi Zhao

    Research Fellow
    Queensland Brain Institute