Research
Imaging and spatial transcriptomics
The Genome Innovation Hub continually develops a number of protocols and procedures while undertaking our collaborative projects. Below are a selection of detailed developments useful to researchers undertaking genomic-related advanced imaging in the laboratory.
Developments
Featured projects | Duration |
---|---|
Developing a next generation single-cell transcriptomic tool Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2023 |
Long read spatial transcriptomics Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2023 |
Developing new "spatial omics" capabilities Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Automated single cell quantitative in situ gene expression in cells and tissues (AutoMerFISH) Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2019 |
Spatial genomics technologies to study cancer and genetic diseases in tissue contexts Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2019 |
Publications & pre-prints
Andrew Su, HoJoon Lee, Xiao Tan, Carlos J. Suarez, Noemi Andor, Quan Nguyen, Hanlee P. Ji
bioRxiv 2021.03.18.436004; doi: https://doi.org/10.1101/2021.03.18.436004
M Tran, S Yoon, ST Min, S Andersen, K Devitt, PY Lam, B Purdue, A Raghubar, SJ Hanson, K Jones, S Walters, ZK Tuong, HP Soyer, I Frazer, Q Nguyen
bioRxiv 2020.09.10.290833
Arti M. Raghubar, Duy T. Pham, Xiao Tan, Laura F. Grice, Joanna Crawford, Pui Yeng Lam, Stacey B. Andersen, Sohye Yoon, Monica S.Y. Ng, Siok Min Teoh, Samuel E. Holland, Anne Stewart, Leo Francis, Alexander N. Combes, Andrew J. Kassianos, Helen Healy, Quan Nguyen, Andrew J. Mallett
bioRxiv 2020.09.29.317917
Duy Pham, Xiao Tan, Jun Xu, Laura F. Grice, Pui Yeng Lam, Arti Raghubar, Jana Vukovic, Marc J. Ruitenberg, Quan Nguyen
bioRxiv 2020.05.31.125658;
SpaCell: integrating tissue morphology and spatial gene expression to predict disease cells
Xiao Tan, Andrew Su, Minh Tran, Quan Nguyen, SpaCell: integrating tissue morphology and spatial gene expression to predict disease cells
Bioinformatics, Volume 36, Issue 7, 1 April 2020, Pages 2293–2294,