The Genome Innovation Hub continually develops a number of protocols and procedures while undertaking our collaborative projects. Below are a selection of detailed developments useful to researchers undertaking long read sequencing procedures in the laboratory.

Developments

Featured projects Duration
Nanopore sequencing of DNA from extracellular vesicles
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2023
Long read spatial transcriptomics
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2023
Cas9 targeted enrichment for Nanopore sequencing
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2023
Using nanopore sequencing to test mRNA vaccine quality.
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2022
Multi-contact Pore-C
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2022
Adaptive sequencing for metagenomic sequencing of low biomass samples
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2022
Culture-independent metagenomic diagnostics
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2021
Deciphering the epitranscriptome machinery using direct native RNA sequencing
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2021
Assessing DNA Replication Dynamics in Cancer
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2021
A genomic dissection of metaorganisms: molecular approaches for teasing apart the hologenome
Genome Innovation Hub Collaborative Project (UQ infrastructure)
2020

Pages

Publications

 

Comparison of long-read methods for sequencing and assembly of a plant genome 

Valentine Murigneux, Subash Kumar Rai, Agnelo Furtado, Timothy J C Bruxner, Wei Tian, Ivon Harliwong, Hanmin Wei, Bicheng Yang, Qianyu Ye, Ellis Anderson, Qing Mao, Radoje Drmanac, Ou Wang, Brock A Peters, Mengyang Xu, Pei Wu, Bruce Topp, Lachlan J M Coin, Robert J Henry

GigaScience, Volume 9, Issue 12, December 2020, giaa146, https://doi.org/10.1093/gigascience/giaa146

 

Improvements in the Sequencing and Assembly of Plant Genomes

Priyanka Sharma, Othman Al-dossary, Bader Alsubaie, Ibrahim Al-mssallem, Onkar Nath, Neena Mitter, Gabriel Rodrigues Alves Margarido, Bruce Topp, Valentine Murigneux, Ardashir Kharabian Masouleh, Agnelo Furtado, Robert J. Henry

Gigabyte, 1, 2021 https://doi.org/10.46471/gigabyte.24

 

Nanopore Sequencing Enables Comprehensive Transposable Element Epigenomic Profiling.

Adam D. Ewing, Nathan Smits, Francisco J. Sanchez-Luque, Jamila Faivre, Paul M. Brennan, Sandra R. Richardson, Seth W. Cheetham, Geoffrey J. Faulkner,

Molecular Cell, Volume 80, Issue 5, 2020, Pages 915-928.e5, ISSN 1097-2765,

https://doi.org/10.1016/j.molcel.2020.10.024.

 

Webinars

Valentine Murigneux presents a comparison of long read methods for sequencing and assembly of a plant genome

Published on: 1 May 2020

This webinar will present a comparison of three long read sequencing technologies applied to the de novo assembly of a plant genome, Macadamia jansenii, presented by Valentine Murigneux (GIH/QFAB).
GIH Collaborative Project.

Hosted by Australian BioCommons.

 

Professor Lachlan Coin presents a de novo assembly of the genome of Australia’s vulnerable plant species, Macadamia jansenii

Published on: 16 April 2020

In this webinar, Professor Lachlan Coin will talk about his recent study with the Genome Innovation Hub at The University of Queensland for de novo assembly of the genome of Australia’s vulnerable plant species, Macadamia jansenii. In this study several long read sequencing technologies, including MGI’s unique single-tube Long Fragment Read (stLFR), are compared for the same sample.
GIH Collaborative Project.

Hosted by MGI

 

 

 

 

  • Dominic

    Dr Dominic Guanzon

    Genomics Theme Leader
    Translational Extracellular Vesicles in Obstetrics and Gynae-Oncology Group
    Lions Medical Research Foundation Fellow
    UQ Centre for Clinical Research, Faculty of Medicine
  • Dean Basic

    Computational biologist
    Genome Innovation Hub
  • Associate Professor Scott Beatson

    Associate Professor Scott Beatson

    Associate Professor
    School of Chemistry and Molecular Biosciences, Faculty of Science
    Affiliate Associate Professor
    UQ Centre for Clinical Research, Faculty of Medicine
  • Dr Tim Bruxner

    Dr Tim Bruxner

    Sequencing Specialist
    Institute for Molecular Bioscience
  • Dr Cheong Xin Chan

    Dr Cheong Xin Chan

    Senior Research Fellow
    School of Chemistry and Molecular Biosciences, Faculty of Science
    Affiliate Research Fellow
    Institute for Molecular Bioscience
  • Professor Paul Clarke

    Professor Paul Clarke

    Director, UQ Diamantina Institute
    The University of Queensland Diamantina Institute, Faculty of Medicine
  • Associate Professor Peter Erskine

    Associate Professor Peter Erskine

    Program Leader/Assoc Prof
    Centre for Mined Land Rehabilitation, Sustainable Minerals Institute
  • Dr Brian Forde

    Dr Brian Forde

    Advance Queensland Industry Research Fellow
    UQ Centre for Clinical Research Faculty of Medicine
  • Dr Agnelo Furtado

    Dr Agnelo Furtado

    Senior Research Fellow
    Centre for Nutrition and Food Sciences, Queensland Alliance for Agriculture and Food Innovation
  • Dr Emily Goodall

    Dr Emily Goodall

    Research Officer
    Institute for Molecular Bioscience
  • Dr Helen Gunter

    Dr Helen Gunter

    Laboratory Manager -Mercer
    Australian Institute for Bioengineering and Nanotechnology
  • Professor Ian Henderson

    Professor Ian Henderson

    Director
    Institute for Molecular Bioscience
    Affiliate Professor
    UQ Centre for Clinical Research, Faculty of Medicine
    Affiliate Professor
    School of Chemistry and Molecular Biosciences, Faculty of Science
  • Professor Robert Henry

    Professor Robert Henry

    Professor of Innovation in Agriculture
    Centre for Crop Science, Queensland Alliance for Agriculture and Food Innovation
  • Dr Mathew Jones

    Dr Mathew Jones

    Research Fellow
    The University of Queensland Diamantina Institute, Faculty of Medicine
  • Dr Sanjaya KC

    Dr Sanjaya KC

    Research Officer
    Institute for Molecular Bioscience
  • Associate Professor Timothy Mercer

    Associate Professor Timothy Mercer

    Principal Research Fellow and GL
    Australian Institute for Bioengineering and Nanotechnology
  • Valentine Murigneux

    Valentine Murigneux

    Computational biologist
    Genome Innovation Hub
    Bioinformatician
    QCIF Facility for Advanced Bioinformatics
  • Duy

    Dr Minh-Duy Phan

    Research Fellow
    Institute for Molecular Bioscience
  • Dr Subash Rai

    Dr Subash Rai

    Research Specialist - Long Read Sequencing
    Genome Innovation Hub
  • Dr Elizabeth Ross

    Dr Elizabeth Ross

    Research Fellow
    Centre for Animal Science, Queensland Alliance for Agriculture and Food Innovation
  • Professor Mark Schembri

    Professor Mark Schembri

    Affiliate Professor & Professorial Research Fellow & Group Leader
    Institute for Molecular Bioscience
    Professor
    School of Chemistry and Molecular Biosciences, Faculty of Science
  • Dr Antony Van der Ent

    Dr Antony Van der Ent

    UQ Amplify Researcher, Senior Research Fellow
    Centre for Mined Land Rehabilitation, Sustainable Minerals Institute
  • Professor Mark Walker

    Professor Mark Walker

    Professor
    School of Chemistry and Molecular Biosciences, Faculty of Science
  • Isabel Warner

    Isabel Warner

    PhD candidate
    Institute for Molecular Bioscience
  • Dr Sohye Yoon

    Dr Sohye Yoon

    Research Specialist - Genomics
    Genome innovation Hub