Research
Bioinformatic and computational tools
The Genome Innovation Hub continually develops a number of protocols and procedures while undertaking our collaborative projects. Below are a selection of detailed developments useful to researchers undertaking genomic-related data analysis.
Developments
Featured projects | Duration |
---|---|
Guide RNA design in non-model organisms Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2023 |
Developing a next generation single-cell transcriptomic tool Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2023 |
Bacterial CRISPRi Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2023 |
High-throughput sequencing of protein variant libraries Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2023 |
Optimised bioinformatics and validation pipeline for genome-wide CRISPR screening data Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Developing a scalable genome browser and repository for complex multi-omic datasets. Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Genome-Phaser: protocol for fully phasing whole genome variants using haplotagging Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Deciphering the epitranscriptome machinery using direct native RNA sequencing Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Assessing DNA Replication Dynamics in Cancer Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
RNA velocity quantification of single-cell transcriptomics Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Pages
Publications & pre-prints
Andrew Su, HoJoon Lee, Xiao Tan, Carlos J. Suarez, Noemi Andor, Quan Nguyen, Hanlee P. Ji
bioRxiv 2021.03.18.436004; doi: https://doi.org/10.1101/2021.03.18.436004
Duy Pham, Xiao Tan, Jun Xu, Laura F. Grice, Pui Yeng Lam, Arti Raghubar, Jana Vukovic, Marc J. Ruitenberg, Quan Nguyen
bioRxiv 2020.05.31.125658
Comparison of long read methods for sequencing and assembly of a plant genome
Valentine Murigneux, Subash Kumar Rai, Agnelo Furtado, Timothy J.C. Bruxner, Wei Tian, Qianyu Ye, Hanmin Wei, Bicheng Yang, Ivon Harliwong, Ellis Anderson, Qing Mao, Radoje Drmanac, Ou Wang, Brock A. Peters, Mengyang Xu, Pei Wu, Bruce Topp, Lachlan J.M. Coin, Robert J. Henry
bioRxiv 2020.03.16.992933
Arti M. Raghubar, Duy T. Pham, Xiao Tan, Laura F. Grice, Joanna Crawford, Pui Yeng Lam, Stacey B. Andersen, Sohye Yoon, Monica S.Y. Ng, Siok Min Teoh, Samuel E. Holland, Anne Stewart, Leo Francis, Alexander N. Combes, Andrew J. Kassianos, Helen Healy, Quan Nguyen, Andrew J. Mallett
bioRxiv 2020.09.29.317917