| Featured projects | Duration |
|---|---|
|
Proximity ligation sequencing of mixed bacterial communities Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2023 |
Journal Articles
Nhu, Nguyen Thi Khanh, Forde, Brian M., Ben Zakour, Nouri L., Phan, Minh-Duy, Roberts, Leah W., Beatson, Scott A. and Schembri, Mark A. (2024). Evolution of the pheV-tRNA integrated genomic island in Escherichia coli. PLoS Genetics, 20 (10) e1011459, e1011459. doi: 10.1371/journal.pgen.1011459
Thanh, Tran Tan, Tu, Nguyen Thi Kha, Nguyet, Lam Anh, Thuy, Cao Thu, Thuan, Nguyen Lam Thai, Ny, Nguyen Thi Han, Nhu, Le Nguyen Truc, Thanh, Le Kim, Hong, Nguyen Thi Thu, Anh, Nguyen To, Truong, Nguyen Thanh, Chau, Nguyen Van Vinh, Yen, Lam Minh, Van, E. Phan, Thuong, Nguyen Phong, Truc, Nguyen Van, Trung, Pham Huu, Yap, Wee Chee, Pandey, Rahul, Yee, Sidney, Weng, Ruifen, Mongkolsapaya, Juthathip, Dejnirattisai, Wanwisa, Hamers, Raph L., Chantratita, Narisara, Screaton, Gavin, Dunachie, Susanna J., Jones, E. Yvonne, Stuart, David ... Tan, Le Van (2024). Immunogenicity of Abdala COVID-19 vaccine in Vietnamese people after primary and booster vaccinations: A prospective observational study in Vietnam. International Journal of Infectious Diseases, 147 ARTN 107173, 107173. doi: 10.1016/j.ijid.2024.107173
Nhat, Phung Tran Huy, Hao, Nguyen Van, Yen, Lam Minh, Anh, Nguyen Hoang, Khiem, Dong Phu, Kerdegari, Hamideh, Phuong, Le Thanh, Hoang, Vo Tan, Ngoc, Nguyen Thanh, Thu, Le Ngoc Minh, Trung, Truong Ngoc, Pisani, Luigi, Razavi, Reza, Yacoub, Sophie, Chau, Nguyen Van Vinh, King, Andrew P., Thwaites, Louise, Denehy, Linda and Gomez, Alberto (2024). Clinical evaluation of AI-assisted muscle ultrasound for monitoring muscle wasting in ICU patients. Scientific Reports, 14 (1) 14798. doi: 10.1038/s41598-024-64564-w
Yang, Jenny, Clifton, Lei, Dung, Nguyen Thanh, Phong, Nguyen Thanh, Yen, Lam Minh, Thy, Doan Bui Xuan, Soltan, Andrew A. S., Thwaites, Louise and Clifton, David A. (2024). Mitigating machine learning bias between high income and low-middle income countries for enhanced model fairness and generalizability. Scientific Reports, 14 (1) 13318. doi: 10.1038/s41598-024-64210-5
Nhu, Nguyen Thi Khanh, Phan, Minh-Duy, Hancock, Steven J., Peters, Kate M., Alvarez-Fraga, Laura, Forde, Brian M., Andersen, Stacey B., Miliya, Thyl, Harris, Patrick N. A., Beatson, Scott A., Schlebusch, Sanmarie, Bergh, Haakon, Turner, Paul, Brauner, Annelie, Westerlund-Wikström, Benita, Irwin, Adam D. and Schembri, Mark A (2024). High-risk Escherichia coli clones that cause neonatal meningitis and association with recrudescent infection. eLife, 12 ARTN RP91853. doi: 10.7554/elife.91853.3
McBride, Angela, Duyen, Huynh Thi Le, Vuong, Nguyen Lam, Tho, Phan Vinh, Tai, Luong Thi Hue, Phong, Nguyen Thanh, Ngoc, Nguyen Thanh, Yen, Lam Minh, Nhat, Phung Tran Huy, Vi, Tran Thuy, Llewelyn, Martin J., Thwaites, Louise, Hao, Nguyen Van and Yacoub, Sophie (2024). Endothelial and inflammatory pathophysiology in dengue shock: New insights from a prospective cohort study in Vietnam. Plos Neglected Tropical Diseases, 18 (3) ARTN e0012071, e0012071. doi: 10.1371/journal.pntd.0012071
Be, Pham Thi, Hang, Nguyen Thuy, Khu, Le Van, Hung, Hoang Van, Trinh, Bui Cong, Tan, Vu Minh, Ha, Nguyen Ngoc and Ha, Nguyen Thi Thu (2024). Study on the adsorption of 2,4-dichlorophenoxyacetic acid on silver doped carbon nanotube using tight-binding quantum chemical method. Computational and Theoretical Chemistry, 1234 ARTN 114517. doi: 10.1016/j.comptc.2024.114517
Nhu, Nguyen Thi Khanh, Rahman, M. Arifur, Goh, Kelvin G. K., Kim, Seung Jae, Phan, Minh-Duy, Peters, Kate M., Alvarez-Fraga, Laura, Hancock, Steven J., Ravi, Chitra, Kidd, Timothy J., Sullivan, Matthew J., Irvine, Katharine M., Beatson, Scott A., Sweet, Matthew J., Irwin, Adam D., Vukovic, Jana, Ulett, Glen C., Hasnain, Sumaira Z. and Schembri, Mark A. (2024). A convergent evolutionary pathway attenuating cellulose production drives enhanced virulence of some bacteria. Nature Communications, 15 (1) 1441, 1441. doi: 10.1038/s41467-024-45176-4
Phan, Minh-Duy, Schirra, Horst Joachim, Nhu, Nguyen Thi Khanh, Peters, Kate M., Sarkar, Sohinee, Allsopp, Luke P., Achard, Maud E. S., Kappler, Ulrike and Schembri, Mark A. (2024). Combined functional genomic and metabolomic approaches identify new genes required for growth in human urine by multidrug-resistant
Escherichia coli
ST131. mBio, 15 (3), e0338823. doi: 10.1128/mbio.03388-23
Hai, Ho Bich, Cattrall, Jonathan W. S., Hao, Nguyen Van, Van, Hoang Minh Tu, Thuy, Duong Bich, Nhat, Phung Tran Huy, Khanh, Phan Nguyen Quoc, Duong, Ha Thi Hai, Duong, Tran Duc, Lu, Ping, Phuong, Le Thanh, Greeff, Heloise, Zhu, Tingting, Yen, Lam Minh, Clifton, David and Thwaites, C. Louise (2024). Heart Rate Variability Measured from Wearable Devices as a Marker of Disease Severity in Tetanus. American Journal of Tropical Medicine and Hygiene, 110 (1), 165-169. doi: 10.4269/ajtmh.23-0531
Khuong, Tran Thi Thanh, Duy, Nguyen Lam Khanh, Hang, Nguyen Thuy, Ngoc, Phan Kim and Tuyen, Duong Nguyen Duy (2023). Improving indigenous Vietnamese black rabbit frozen sperm quality: the role of glycine and sperm selection methods. World Rabbit Science, 31 (4), 229-236. doi: 10.4995/wrs.2023.19690
Vy, Ngo T. T., Khanh, Dang N. N., Khoa, Le H., Phat, Nguyen T., Thang, Nguyen Q., Trung, Le H., Nhu, Nguyen T. H., Phuong, Doan T. M. and Phuong, Nguyen T. K. (2023). Experimental design modelling and optimization of the intercalation of levofloxacin and salicylic acid into the structure of ZnAl-LDH by response surface method: in vitro study of release kinetics, antibacterial and anti-inflammatory activities. Journal of the Brazilian Chemical Society. doi: 10.21577/0103-5053.20230180
Luan, Nguyen Ngoc, Nam, Nguyen Mau, Thieu, Nguyen Nang and Yen, Nguyen Dong (2023). Relationships between polyhedral convex sets and generalized polyhedral convex sets. Journal of Optimization Theory and Applications, 199 (2), 766-786. doi: 10.1007/s10957-023-02269-2
Anh, Vu Thi Lan, Hang, Nguyen Thi Thu and Loc, Nguyen (2023). Alumni's perspectives on the training program of the universities administered by the Vietnam Ministry of Transport: an EFA-based descriptive study on CDIO. International Journal of Innovation and Learning, 34 (1), 36-58. doi: 10.1504/IJIL.2023.132041
Lian, Zheng Jie, Phan, Minh-Duy, Hancock, Steven J., Nhu, Nguyen Thi Khanh, Paterson, David L. and Schembri, Mark A. (2023). Genetic basis of I-complex plasmid stability and conjugation. PLoS Genetics, 19 (6) e1010773, 1-21. doi: 10.1371/journal.pgen.1010773
Nhu, Nguyen Thi Khanh, Ravi, Chitra and Schembri, Mark A. (2023). Uropathogenic Escherichia coli biofilms. Microbiology Australia, 44 (2), 109-112. doi: 10.1071/ma23030
Du, Duc Hong, Hao, Nguyen Quan Nhu, Van Hao, Nguyen, Thanh, Tran Tan, Loan, Huynh Thi, Yen, Lam Minh, Thuy, Tran Thi Diem, Thuy, Duong Bich, Nguyen, Nguyen Thanh, Dung, Nguyen Thi Phuong, Kestelyn, Evelyne, Duong, Ha Thi Hai, Phong, Nguyen Thanh, Tuyen, Pham Thi, Phu, Nguyen Hoan, Nghia, Ho Dang Trung, Hanh, Bui Thi Bich, Oanh, Pham Kieu Nguyet, Tho, Phan Vinh, Nhat, Phung Tran Huy, Khanh, Phan Nguyen Quoc, Wyncoll, Duncan, Day, Nicholas P. J., Van Vinh Chau, Nguyen, van Doorn, H. Rogier, Van Tan, Le, Geskus, Ronald B. and Thwaites, C. Louise (2023). Urinary catecholamine excretion, cardiovascular variability, and outcomes in tetanus. Tropical Medicine and Health, 51 (1) ARTN 20. doi: 10.1186/s41182-023-00512-0
Mu, Andre, Klare, William P., Baines, Sarah L., Ignatius Pang, C. N., Guérillot, Romain, Harbison-Price, Nichaela, Keller, Nadia, Wilksch, Jonathan, Nhu, Nguyen Thi Khanh, Phan, Minh-Duy, Keller, Bernhard, Nijagal, Brunda, Tull, Dedreia, Dayalan, Saravanan, Chua, Hwa Huat Charlie, Skoneczny, Dominik, Koval, Jason, Hachani, Abderrahman, Shah, Anup D., Neha, Nitika, Jadhav, Snehal, Partridge, Sally R., Cork, Amanda J., Peters, Kate, Bertolla, Olivia, Brouwer, Stephan, Hancock, Steven J., Álvarez-Fraga, Laura, De Oliveira, David M. P. ... Walker, Mark J. (2023). Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria. Nature Communications, 14 (1) 1530, 1-21. doi: 10.1038/s41467-023-37200-w
Nguyen, Van-Chu, Nguyen, Trong Hieu, Phan, Thanh Hai, Tran, Thanh-Huong Thi, Pham, Thu Thuy Thi, Ho, Tan Dat, Nguyen, Hue Hanh Thi, Duong, Minh-Long, Nguyen, Cao Minh, Nguyen, Que-Tran Bui, Bach, Hoai-Phuong Thi, Kim, Van-Vu, Pham, The-Anh, Nguyen, Bao Toan, Nguyen, Thanh Nhan Vo, Huynh, Le Anh Khoa, Tran, Vu Uyen, Tran, Thuy Thi Thu, Nguyen, Thanh Dang, Phu, Dung Thai Bieu, Phan, Boi Hoan Huu, Nguyen, Quynh-Tho Thi, Truong, Dinh-Kiet, Do, Thanh-Thuy Thi, Nguyen, Hoai-Nghia, Phan, Minh-Duy, Giang, Hoa and Tran, Le Son (2023). Fragment length profiles of cancer mutations enhance detection of circulating tumor DNA in patients with early-stage hepatocellular carcinoma. BMC Cancer, 23 (1) 233, 1-17. doi: 10.1186/s12885-023-10681-0
Nguyen, Thi Hue Hanh, Lu, Y-Thanh, Le, Van Hoi, Bui, Vinh Quang, Nguyen, Lan Hieu, Pham, Nhu Hiep, Phan, Thanh Hai, Nguyen, Huu Thinh, Tran, Van Song, Bui, Chi Viet, Vo, Van Kha, Nguyen, Pham Thanh Nhan, Dang, Ha Huu Phuoc, Pham, Van Dung, Cao, Van Thinh, Nguyen, Thanh Dat, Nguyen, Luu Hong Dang, Phan, Ngoc Minh, Nguyen, Trong Hieu, Nguyen, Van Thien Chi, Pham, Thi Mong Quynh, Tran, Vu Uyen, Le, Minh Phong, Vo, Dac Ho, Tran, Thi Minh Thu, Nguyen, Minh Nguyen, Nguyen, Thi Thanh, Tieu, Ba Linh, Nguyen, Huu Tam Phuc ... Tran, Le Son (2023). Clinical validation of a ctDNA-based assay for multi-cancer detection: an interim report from a Vietnamese longitudinal prospective cohort study of 2795 participants. Cancer Investigation, 41 (3), 232-248. doi: 10.1080/07357907.2023.2173773
Van Vinh Chau, Nguyen, Nguyet, Lam Anh, Dung, Nguyen Thanh, Quang, Vo Minh, Truong, Nguyen Thanh, Toan, Le Mau, Hung, Le Manh, Man, Dinh Nguyen Huy, Khoa, Dao Bach, Phong, Nguyen Thanh, Ngoc, Nghiem My, Thao, Huynh Phuong, Ty, Dinh Thi Bich, Thanh, Pham Ba, Ny, Nguyen Thi Han, Thanh, Le Kim, Thuy, Cao Thu, Anh, Nguyen To, Hong, Nguyen Thi Thu, Nhu, Le Nguyen Truc, Yen, Lam Minh, Thwates, Guy, Thanh, Tran Tan and Van Tan, Le (2023). Kinetics of neutralizing antibodies against omicron variant in Vietnamese healthcare workers after primary immunization with ChAdOx1-S and booster immunization with BNT162b2. American Journal of Tropical Medicine and Hygiene, 108 (1), 137-144. doi: 10.4269/ajtmh.22-0434
Dang Van Cuong,, Mordukhovich, Boris S., Nguyen, Mau Nam and Sandine, Gary (2023). Revisiting Rockafellar's theorem on relative interiors of convex graphs with applications to convex generalized differentiation. Journal of Convex Analysis, 30 (3), 835-850.
Quan, Pham Minh, Anh, Hoang Ba Quang, Hang, Nguyen Thi Nguyet, Toan, Dao Huy, Ha, Dao Viet and Long, Pham Quoc (2022). Marine derivatives prevent E6 protein of HPV: an in silico study for drug development. Regional Studies in Marine Science, 56 102619, 1-7. doi: 10.1016/j.rsma.2022.102619
McBride, Angela, Nguyen, Lam Vuong, Nguyen, Van Hao, Nguyen, Quang Huy, Ho, Quang Chanh, Nguyen,Thi Xuan Chau, Nguyen, Minh Nguyet, Ming, Damien K., Nguyen, Thanh Ngoc, Phung, Tran Huy Nhat, Nguyen, Thanh Phong, Luong, Thi Hue Tai, Phan, Vinh Tho, Dinh, The Trung, Dong, Thi Hoai Tam, Huynh, Trung Trieu, Geskus, Ronald Bertus, Llewelyn, Martin J., Thwaites, C. Louise and Yacoub, Sophie (2022). A modified Sequential Organ Failure Assessment score for dengue: development, evaluation and proposal for use in clinical trials. BMC Infectious Diseases, 22 (1) 722, 1-12. doi: 10.1186/s12879-022-07705-8
Hancock, Steven J., Lo, Alvin W., Ve, Thomas, Day, Christopher J., Tan, Lendl, Mendez, Alejandra A., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Peters, Kate M., Richards, Amanda C., Fleming, Brittany A., Chang, Chyden, Ngu, Dalton H. Y., Forde, Brian M., Haselhorst, Thomas, Goh, Kelvin G. K., Beatson, Scott A., Jennings, Michael P., Mulvey, Matthew A., Kobe, Bostjan and Schembri, Mark A. (2022). Ucl fimbriae regulation and glycan receptor specificity contribute to gut colonisation by extra-intestinal pathogenic Escherichia coli. PLoS Pathogens , 18 (6) e1010582, e1010582. doi: 10.1371/journal.ppat.1010582
Schembri, Mark A., Nhu, Nguyen Thi Khanh and Phan, Minh-Duy (2022). Gut–bladder axis in recurrent UTI. Nature Microbiology, 7 (5), 601-602. doi: 10.1038/s41564-022-01113-z
Zhu, Lei, van der Pluijm, Rob W., Kucharski, Michal, Nayak, Sourav, Tripathi, Jaishree, White, Nicholas J., Day, Nicholas P. J., Faiz, Abul, Phyo, Aung Pyae, Amaratunga, Chanaki, Lek, Dysoley, Ashley, Elizabeth A., Nosten, Francois, Smithuis, Frank, Ginsburg, Hagai, von Seidlein, Lorenz, Lin, Khin, Imwong, Mallika, Chotivanich, Kesinee, Mayxay, Mayfong, Dhorda, Mehul, Hoang Chau Nguyen, Thuy Nhien Thanh Nguyen, Miotto, Olivo, Newton, Paul N., Jittamala, Podjanee, Tripura, Rupam, Pukrittayakamee, Sasithon, Peto, Thomas J. ... Bozdech, Zbynek (2022). Artemisinin resistance in the malaria parasite, Plasmodium falciparum, originates from its initial transcriptional response. Communications Biology, 5 (1) 274. doi: 10.1038/s42003-022-03215-0
Nguyen Van Vinh Chau, , Lam Anh Nguyet, , Nguyen Thanh Truong, , Le Mau Toan, , Nguyen Thanh Dung, , Le Manh Hung, , Mai Thanh Nhan, , Dinh Nguyen Huy Man, , Nghiem My Ngoc, , Huynh Phuong Thao, , Tran Nguyen Hoang Tu, , Huynh Kim Mai, , Do Thai Hung, , Nguyen Thi Han Ny, , Le Kim Thanh, , Nguyen To Anh, , Nguyen Thi Thu Hong, , Le Nguyen Truc Nhu, , Lam Minh Yen, , Choisy, Marc, Tran Tan Thanh, , Thwaites, Guy and Le Van Tan, (2022). Immunogenicity of Oxford-AstraZeneca COVID-19 Vaccine in Vietnamese Health-Care Workers. American Journal of Tropical Medicine and Hygiene, 106 (2), 556-561. doi: 10.4269/ajtmh.21-0849
Alvarez-Fraga, Laura, Phan, Minh-Duy, Goh, Kelvin G. K., Nhu, Nguyen Thi Khanh, Hancock, Steven J., Allsopp, Luke P., Peters, Kate M., Forde, Brian M., Roberts, Leah W., Sullivan, Matthew J., Totsika, Makrina, Beatson, Scott A., Ulett, Glen C. and Schembri, Mark A. (2022). Differential Afa/Dr fimbriae expression in the multidrug-resistant Escherichia coli ST131 clone. mBio, 13 (1) e03519, e0351921. doi: 10.1128/mbio.03519-21
Phan, Minh-Duy, Peters, Kate M., Alvarez Fraga, Laura, Wallis, Steven C., Hancock, Steven, Nhu, Nguyen Thi Khanh, Forde, Brian, Bauer, Michelle J., Paterson, David L., Beatson, Scott A, Lipman, Jeffrey and Schembri, Mark A. (2022). Plasmid-mediated ciprofloxacin resistance imparts a selective advantage on Escherichia coli ST131. Antimicrobial Agents and Chemotherapy, 66 (1) e02146-21, 1-11. doi: 10.1128/aac.02146-21
Tran, Van Thuan, Nguyen, Sao Trung, Pham, Xuan Dung, Phan, Thanh Hai, Nguyen, Van Chu, Nguyen, Huu Thinh, Nguyen, Huu Phuc, Doan, Phuong Thao Thi, Le, Tuan Anh, Nguyen, Bao Toan, Jasmine, Thanh Xuan, Nguyen, Duy Sinh, Nguyen, Hong-Dang Luu, Nguyen, Ngoc Mai, Do, Duy Xuan, Tran, Vu Uyen, Nguyen, Hue Hanh Thi, Le, Minh Phong, Nguyen, Yen Nhi, Do, Thanh Thuy Thi, Truong, Dinh Kiet, Tang, Hung Sang, Phan, Minh-Duy, Nguyen, Hoai-Nghia, Giang, Hoa and Tu, Lan N. (2022). Pathogenic Variant Profile of Hereditary Cancer Syndromes in a Vietnamese Cohort. Frontiers in Oncology, 11 789659. doi: 10.3389/fonc.2021.789659
Murigneux, Valentine, Roberts, Leah W., Forde, Brian M., Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Irwin, Adam D., Harris, Patrick N. A., Paterson, David L., Schembri, Mark A., Whiley, David M. and Beatson, Scott A. (2021). MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction. BMC Genomics, 22 (1) 474, 474. doi: 10.1186/s12864-021-07767-z
Nguyen, Van Vinh Chau, Vo, Thanh Lam, Nguyen, Thanh Dung, Lam, Minh Yen, Ngo, Ngoc Quang Minh, Le, Manh Hung, Nghiem, My Ngoc, Nguyen, Tri Dung, Dinh Nguyen, Huy Man, Lam, Anh Nguyet, Le, Thanh Hoang Nhat, Le, Nguyen Truc Nhu, Nguyen, Thi Han Ny, Nguyen, Thi Thu Hong, Kestelyn, Evelyne, Nguyen, Thi Phuong Dung, Tran, Chanh Xuan, Tran, Tinh Hien, Nguyen, Thanh Phong, Tran Nguyen, Hoang Tu, Geskus, Ronald B., Tran, Tan Thanh, Nguyen, Thanh Truong, Nguyen, Tan Binh, Tang, Chi Thuong, Thwaites, Guy and Le, Van Tan (2020). The natural history and transmission potential of asymptomatic severe acute respiratory syndrome coronavirus 2 infection. Clinical Infectious Diseases, 71 (10), 2679-2687. doi: 10.1093/cid/ciaa711
Hancock, Steven J., Phan, Minh-Duy, Luo, Zhenyao, Lo, Alvin W., Peters, Kate M., Nhu, Nguyen Thi Khanh, Forde, Brian M., Whitfield, Jason, Yang, Ji, Strugnell, Richard A., Paterson, David L., Walsh, Timothy R., Kobe, Bostjan, Beatson, Scott A. and Schembri, Mark A. (2020). Comprehensive analysis of IncC plasmid conjugation identifies a crucial role for the transcriptional regulator AcaB. Nature Microbiology, 5 (11), 1340-1348. doi: 10.1038/s41564-020-0775-0
The, Hao Chung, Boinett, Christine, Duy Pham Thanh, , Jenkins, Claire, Weill, Francois-Xavier, Howden, Benjamin P., Valcanis, Mary, De Lappe, Niall, Cormican, Martin, Wangchuk, Sonam, Bodhidatta, Ladaporn, Mason, Carl J., To Nguyen Thi Nguyen, , Tuyen Ha Thanh, , Vinh Phat Voong, , Vu Thuy Duong, , Phu Huong Lan Nguyen, , Turner, Paul, Wick, Ryan, Ceyssens, Pieter-Jan, Thwaites, Guy, Holt, Kathryn E., Thomson, Nicholas R., Rabaa, Maia A. and Baker, Stephen (2019). Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. Nature Communications, 10 (1) ARTN 4828. doi: 10.1038/s41467-019-12823-0
Nhu, Nguyen Thi Khanh, Phan, Minh-Duy, Forde, Brian M., Murthy, Ambika M. V., Peters, Kate M., Day, Christopher J., Poole, Jessica, Kidd, Timothy J., Welch, Rodney A., Jennings, Michael P., Ulett, Glen C., Sweet, Matthew J., Beatson, Scott A. and Schembri, Mark A. (2019). Complex multilevel control of hemolysin production by uropathogenic Escherichia coli. mBio, 10 (5) e02248-19. doi: 10.1128/mbio.02248-19
Stocks, Claudia J., Phan, Minh-Duy, Achard, Maud E. S., Nhu, Nguyen Thi Khanh, Condon, Nicholas D., Gawthorne, Jayde A., Lo, Alvin W., Peters, Kate M., McEwan, Alastair G., Kapetanovic, Ronan, Schembri, Mark A. and Sweet, Matthew J. (2019). Uropathogenic Escherichia coli employs both evasion and resistance to subvert innate immune-mediated zinc toxicity for dissemination. Proceedings of the National Academy of Sciences, 116 (13), 6341-6350. doi: 10.1073/pnas.1820870116
Murthy, Ambika M. V., Sullivan, Matthew J., Nhu, Nguyen Thi Khanh, Lo, Alvin W., Phan, Minh-Duy, Peters, Kate M., Boucher, Dave, Schroder, Kate, Beatson, Scott A., Ulett, Glen C., Schembri, Mark A. and Sweet, Matthew J. (2019). Variation in hemolysin A expression between uropathogenic Escherichia coli isolates determines NLRP3-dependent vs. -independent macrophage cell death and host colonization. FASEB Journal : official publication of the Federation of American Societies for Experimental Biology, 33 (6), fj201802100R-7450. doi: 10.1096/fj.201802100R
Boinett, Christine J., Cain, Amy K., Hawkey, Jane, Nhu Tran Do Hoang,, Nhu, Nguyen Thi Khanh Nhu, Pham, Thanh Duy, Dordel, Janina, Campbell, James, Nguyen Phu Huong Lan,, Mayho, Matthew, Langridge, Gemma C., Hadfield, James, Nguyen Van Vinh Chau,, Thwaites, Guy E., Parkhill, Julian, Thomson, Nicholas R., Holt, Kathryn E. and Baker, Stephen (2019). Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. Microbial Genomics, 5 (2) 000246. doi: 10.1099/mgen.0.000246
Nhu, Nguyen Thi Khanh, Phan, Minh-Duy, Peters, Kate M., Lo, Alvin W., Forde, Brian M., Min Chong, Teik, Yin, Wai-Fong, Chan, Kok-Gan, Chromek, Milan, Brauner, Annelie, Chapman, Matthew R., Beatson, Scott A. and Schembri, Mark A. (2018). Discovery of new genes involved in curli production by a uropathogenic Escherichia coli strain from the highly virulent O45:K1:H7 lineage. mBio, 9 (4) e01462-18. doi: 10.1128/mbio.01462-18
Murthy, Ambika M. V., Phan, Minh-Duy, Peters, Kate M., Nhu, Nguyen Thi Khanh, Welch, Rodney A., Ulett, Glen C., Schembri, Mark A. and Sweet, Matthew J. (2018). Regulation of hemolysin in uropathogenic Escherichia coli fine-tunes killing of human macrophages. Virulence, 9 (1), 1-32. doi: 10.1080/21505594.2018.1465786
Mai, Nguyen T. H., Dobbs, Nicholas, Nguyen Hoan Phu, , Colas, Romain A., Thao, Le T. P., Thuong, Nguyen T. T., Nghia, Ho D. T., Hanh, Nguyen H. H., Hang, Nguyen T., Heemskerk, A. Dorothee, Day, Jeremy N., Ly, Lucy, Thu, Do D. A., Merson, Laura, Kestelyn, Evelyne, Wolbers, Marcel, Geskus, Ronald, Summers, David, Chau, Nguyen V. V., Dalli, Jesmond and Thwaites, Guy E. (2018). A randomised double blind placebo controlled phase 2 trial of adjunctive aspirin for tuberculous meningitis in HIV-uninfected adults. Elife, 7 ARTN e33478. doi: 10.7554/elife.33478
Le Ba Vinh, , Nguyen Thi Minh Nguyet, , Yang, Seo Young, Kim, Jang Hoon, Le Thi Vien, , Phan Thi Thanh Huong, , Nguyen Van Thanh, , Nguyen Xuan Cuong, , Nguyen Hoai Nam, , Chau Van Minh, , Inkyu Hwang, and Kim, Young Ho (2018). A new rearranged abietane diterpene from Clerodendrum inerme with antioxidant and cytotoxic activities. Natural Product Research, 32 (17), 2001-2007. doi: 10.1080/14786419.2017.1360885
Phan, Minh-Duy, Nhu, Nguyen Thi Khanh, Achard, Maud E. S., Forde, Brian M., Hong, Kar Wai, Chong, Teik Min, Yin, Wai-Fong, Chan, Kok-Gan, West, Nicholas P., Walker, Mark J., Paterson, David L., Beatson, Scott A. and Schembri, Mark A. (2017). Modifications in the pmrB gene are the primary mechanism for the development of chromosomally encoded resistance to polymyxins in uropathogenic Escherichia coli. Journal of Antimicrobial Chemotherapy, 72 (10), 2729-2736. doi: 10.1093/jac/dkx204
Hassan, Karl A., Cain, Amy K., Huang, TaoTao, Liu, Qi, Elbourne, Liam D. H., Boinett, Christine J., Brzoska, Anthony J., Li, Liping, Ostrowski, Martin, Nhu, Nguyen Thi Khanh, Nhu, Tran Do Hoang, Baker, Stephen, Parkhill, Julian and Paulsen, Ian T. (2016). Fluorescence-based flow sorting in parallel with transposon insertion site sequencing identifies multidrug efflux systems in Acinetobacter baumannii. mBio, 7 (5) e01200-16. doi: 10.1128/mBio.01200-16
Ben Zakour, Nouri L, Alsheikh-Hussain, Areej S, Ashcroft, Melinda M, Khanh Nhu, Nguyen Thi, Roberts, Leah W, Stanton-Cook, Mitchell, Schembri, Mark A and Beatson, Scott A (2016). Erratum for Ben Zakour et al., Sequential Acquisition of Virulence and Fluoroquinolone Resistance Has Shaped the Evolution of Escherichia coli ST131. mBio, 7 (3), 1-1. doi: 10.1128/mBio.00958-16
Nhu, Nguyen Thi Khanh, Riordan, David W., Nhu, Tran Do Hoang, Thanh, Duy Pham, Thwaites, Guy, Lan, Nguyen Phu Huong, Wren, Brendan W., Baker, Stephen and Stabler, Richard A. (2016). The induction and identification of novel Colistin resistance mutations in Acinetobacter baumannii and their implications. Scientific Reports, 6 (1) 28291, 28291. doi: 10.1038/srep28291
Ben Zakour, Nouri L., Alsheikh-Hussain, Areej S., Ashcroft, Melinda M., Nhu, Nguyen Thi Khanh, Roberts, Leah W., Stanton-Cook, Mitchell, Schembri, Mark A. and Beatson, Scott A. (2016). Sequential acquisition of virulence and fluoroquinolone resistance has shaped the evolution of Escherichia coli ST131. MBio, 7 (2) e00347-16, e00347-16.1-e00347-16.11. doi: 10.1128/mBio.00347-16
Schultz, Mark B., Duy, Pham Thanh, Nhu, Tran Do Hoan, Wick, Ryan R., Ingle, Danielle J., Hawkey, Jane, Edwards, David J., Kenyon, Johanna J., Nguyen Phu Huong Lan,, Campbell, James I., Thwaites, Guy, Nguyen, Thi Khanh Nhu, Hall, Ruth M., Fournier-Level, Alexandre, Baker, Stephen and Holt, Kathryn E. (2016). Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward. Microbial Genomics, 2 (3) ARTN 50, 1-15. doi: 10.1099/mgen.0.000050
Hoang, Tran Vu, Ha, Tran Thi Thanh, Hoang, Tran Minh, Nhu, Nguyen To, Quoc, Nguyen Cuong, Tam, Nguyen Thi Minh and Mills, Stephen (2015). Impact of a methadone maintenance therapy pilot in Vietnam and its role in a scaled-up response. Harm Reduction Journal, 12 (1) 39. doi: 10.1186/s12954-015-0075-9
Le Minh, Vien, Nhu, Nguyen Thi Khanh, Phat, Voong Vinh, Thompson, Corinne, Lan, Nguyen Phu Huong, Nga, Tran Vu Thieu, Tam, Pham Thi Thanh, Tuyen, Ha Thanh, Nhu, Tran Do Hoang, Van Hao, Nguyen, Loan, Huynh Thi, Yen, Lam Minh, Parry, Christopher M., Nghia, Ho Dang Trung, Campbell, James I., Hien, Tran Tinh, Thwaites, Louise, Thwaites, Guy, Van Vinh Chau, Nguyen and Baker, Stephen (2015). In vitro activity of colistin in antimicrobial combination against carbapenem-resistant acinetobacter baumannii isolated from patients with ventilator-associated pneumonia in Vietnam. Journal of Medical Microbiology, 64 (10), 1162-1169. doi: 10.1099/jmm.0.000137
Le, Vien., Nhu, Nguyen Thi Khanh., Cerdeno-Tarraga, Ana., Campbell, James I., Tuyen, Ha Thanh., Nhu, Tran Do Hoang., Tam, Pham Thi Thanh., Schultsz, Constance., Thwaites, Guy., Thomson, Nicholas R. and Baker, Stephen (2015). Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam. Journal of Medical Microbiology, 64 (8) 000100, 869-878. doi: 10.1099/jmm.0.000100
Holt, Kathryn E., Wertheim, Heiman, Zadoks, Ruth N., Baker, Stephen, Whitehouse, Chris A., Dance, David, Jenney, Adam, Connor, Thomas R., Hsu, Li Yang, Severin, Juliette, Brisse, Sylvain, Cao, Hanwei, Wilksch, Jonathan, Gorrie, Claire, Schultz, Mark B., Edwards, David J., Van Nguyen, Kinh, Nguyen, Trung Vu, Dao, Trinh Tuyet, Mensink, Martijn, Le Minh, Vien, Nhu, Nguyen Thi Khanh, Schultsz, Constance, Kuntaman K., Newton P.N., Moore C.E., Strugnell R.A. and Thomson N.R. (2015). Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. Proceedings of the National Academy of Sciences of the United States of America, 112 (27), E3574-E3581. doi: 10.1073/pnas.1501049112
Beatson, Scott A., Ben Zakour, Nouri L., Totsika, Makrina, Forde, Brian M., Watts, Rebecca E., Mabbett, Amanda N., Szubert, Jan M., Sarkar, Sohinee, Phan, Minh-Duy, Peters, Kate M., Petty, Nicola K., Alikhan, Nabil-Fareed, Sullivan, Mitchell J., Gawthorne, Jayde A., Stanton-Cook, Mitchell, Nguyen Thi Khanh Nhu, Chong, Teik Min, Yin, Wai-Fong, Chan, Kok-Gan, Hancock, Viktoria, Ussery, David W., Ulett, Glen C. and Schembri, Mark A. (2015). Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infection and Immunity, 83 (5), 1749-1764. doi: 10.1128/IAI.02810-14
Nhu, Nguyen Thi Khanh, Lan, Nguyen Phu Huong, Campbell, James I., Parry, Christopher M., Thompson, Corinne, Tuyen, Ha Thanh, Hoang, Nguyen Van Minh, Tam, Pham Thi Thanh, Le, Vien Minh, Nga, Tran Vu Thieu, Nhu, Tran Do Hoang, Van Minh, Pham, Nga, Nguyen Thi Thu, Thuy, Cao Thu, Dung, Le Thi, Yen, Nguyen Thi Thu, Hao, Nguyen Van, Loan, Huynh Thi, Nghia, Ho Dang Trung, Hien, Tran Tinh, Thwaites, Louise, Thwaites, Guy, Chau, Nguyen Van Vinh and Baker, Stephen (2014). Emergence of carbapenem-resistant Acinetobacter baumanniias the major cause of ventilatorassociated pneumonia in intensive care unit patients at an infectious disease hospital in southern Vietnam. Journal of Medical Microbiology, 63 (Pt 10), 1386-1394. doi: 10.1099/jmm.0.076646-0
Holt, Kathryn E., Tran Vu Thieu Nga, , Duy Pham Thanh, , Ha Vinh, , Kim, Dong Wook, My Phan Vu Tra, , Campbell, James I., Nguyen Van Minh Hoang, , Nguyen Thanh Vinh, , Pham Van Minh, , Cao Thu Thuy, , Tran Thi Thu Nga, , Thompson, Corinne, Tran Thi Ngoc Dung, , Nguyen Thi Khanh Nhu, , Phat Voong Vinh, , Pham Thi Ngoc Tuyet, , Hoang Le Phuc, , Nguyen Thi Nam Lien, , Bui Duc Phu, , Nguyen Thi Thuy Ai, , Nguyen Manh Tien, , Nguyen Dong, , Parry, Christopher M., Tran Tinh Hien, , Farrar, Jeremy J., Parkhill, Julian, Dougan, Gordon, Thomson, Nicholas R. and Baker, Stephen (2013). Tracking the establishment of local endemic populations of an emergent enteric pathogen. Proceedings of the National Academy of Sciences of the United States of America, 110 (43), 17522-17527. doi: 10.1073/pnas.1308632110
Vinh, Ha, Anh, Vo Thi Cuc, Anh, Nguyen Duc, Campbell, James I., Hoang, Nguyen Van Minh, Nga, Tran Vu Thieu, Nhu, Nguyen Thi Khanh, Minh, Pham Van, Thuy, Cao Thu, Duy, Pham Thanh, Phuong, Le Thi, Loan, Ha Thi, Chinh, Mai Thu, Thao, Nguyen Thi Thu, Tham, Nguyen Thi Hong, Mong, Bui Li, Bay, Phan Van Be, Day, Jeremy N., Dolecek, Christiane, Lan, Nguyen Phu Huong, Diep, To Song, Farrar, Jeremy J., Chau, Nguyen Van Vinh, Wolbers, Marcel and Baker, Stephen (2011). A multi-center randomized trial to assess the efficacy of gatifloxacin versus ciprofloxacin for the treatment of shigellosis in Vietnamese children. Plos Neglected Tropical Diseases, 5 (8), e1264. doi: 10.1371/journal.pntd.0001264
Nguyen Thi Khanh Nhu, , Ha Vinh, , Tran Vu Thieu Nga, , Stabler, Richard, Pham Thanh Duy, , Le Thi Minh Vien, , van Doorn, H. Rogier, Cerdeno-Tarraga, Ana, Thomson, Nicholas, Campbell, James, Nguyen Van Minh Hoang, , Tran Thi Thu Nga, , Pham Van Minh, , Cao Thu Thuy, , Wren, Brendan, Farrar, Jeremy and Baker, Stephen (2010). The sudden dominance of blaCTX-M harbouring plasmids in Shigella spp. circulating in Southern Vietnam. PLoS Neglected Tropical Diseases, 4 (6) e702. doi: 10.1371/journal.pntd.0000702
Ha Vinh, , Nguyen Thi Khanh Nhu, , Tran Vu Thieu Nga, , Pham Thanh Duy, , Campbell, James I., Nguyen Van Minh Hoang, , Maciej F Boni, , Phan Vu Tra My, , Parry, Christopher, Tran Thi Thu Nga, , Pham Van Minh, , Cao Thu Thuy, , To Song Diep, , Le Thi Phuong, , Mai Thu Chinh, , Ha Thi Loan, , Nguyen Thi Hong Tham, , Mai Ngoc Lanh, , Bui Li Mong, , Vo Thi Cuc Anh, , Phan Van Be Bay, , Nguyen Van Vinh Chau, , Farrar, Jeremy and Baker, Stephen (2009). A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation. BMC Infectious Diseases, 9 (1) 204. doi: 10.1186/1471-2334-9-204
Nhut, DT, Hai, NT, Huyen, PX, Huong, DTQ, Hang, NTT and Teixeira da Silva, JA (2005). Thidiazuron induces high frequency shoot bud formation from Begonia petiole transverse thin cell layer culture. Propagation of Ornamental Plants, 5 (3), 151-157.
Thesis
Nguyen, Thi Khanh Nhu (2018). Molecular and genomic analysis of multidrug resistant Uropathogenic Escherichia coli. PhD Thesis, School of Chemistry and Molecular Biosciences, The University of Queensland. doi: 10.14264/uql.2018.462