Valentine Murigneux
Expertise
- Analysis of next-generation sequencing data
- Analysis of long-read sequencing data (Oxford Nanopore Technology, Pacific Biosciences)
- Development of bioinformatics workflows
Researcher biography
Valentine graduated in 2010 with a Master of Engineering in Bioinformatics and Modelling at the National Institute of Applied Sciences of Lyon, France. There she positioned herself at the interface between life sciences, computer sciences and mathematics. Valentine then honed her ability to work collaboratively within a wet lab research team, leading the data analysis of human and mouse transcriptome sequencing projects aimed at identifying the RNA binding sites of a multiprotein complex and the role of this complex in the regulation of alternative splicing. In 2013, she joined the Genome Integrity, Immunity and Cancer group at the Pasteur Institute where she was in charge of the development of cancer genomics pipelines to identify mutations and chromosomal rearrangements in mouse models of lymphoid cancers. In 2016 she moved to Australia as a Bioinformatics Officer at the UQ Diamantina Institute where she analyzed genomics data in collaboration with eight research teams on a variety of cancer types and diseases. In 2018, she started a joint appointment between the UQ Genome Innovation Hub and the QCIF Facility for Advanced Bioinformatics.
Featured projects | Duration |
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A genomic dissection of metaorganisms: molecular approaches for teasing apart the hologenome Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2020 |
TraDIS-Vault: an interactive searchable genome browser and repository for TraDIS data Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2020 |
Genome-Phaser: protocol for fully phasing whole genome variants using haplotagging Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Deciphering the epitranscriptome machinery using direct native RNA sequencing Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Assessing DNA Replication Dynamics in Cancer Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2021 |
Multi-contact Pore-C Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2022 |
Adaptive sequencing for metagenomic sequencing of low biomass samples Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2022 |
Proximity ligation sequencing of mixed bacterial communities Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2023 |
Discovery of new regulatory networks with long-read transcriptomics Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2019 |
Applying long-read sequencing technology to understand telomere repair and DNA replication Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2019 |
Assembly of complex genome (Macadamia) using single molecule sequencing Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2019 |
Using transposon-sequencing to probe whole cell protein-protein interactions Genome Innovation Hub Collaborative Project (UQ infrastructure) |
2019 |